Buffed Supremacy / Harmony's Energy on Desert to +4 Energy. Also buffed their Science on Tundra to +4, +6 for Snow, and +10 for Ice.

Fixed some end-game wonders not properly creating a building to give their rewards.

Fixed some quest text.

Nerfed the Watchtower's yields from 3 Energy, 3 Science, and 3 Diplomatic Capital to 2 of each.

Increased the Diplomatic Capital yield quest option for the Watchtower to 4 Diplomatic Capital.

As always, I am open to suggestions. If you think a change was for the worse, or have a suggestion, feel free to post it.
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Fixes:

Fixed some quest bonuses that were not granting a free building for their bonus properly.

Fixed a minor quest text icon error.

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Balance:
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Harmony/ Purity
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Nerfed the Sky Temple from 5 to 3 Diplomatic Capital and Culture and nerfed the trade route Culture bonus from 3 to 2 Culture.

The culture bonus doubles on trade routes, so it will still output obscene amounts of the yield.

The Sky Temple quest now properly displays that the Floatstone tile bonuses are 6 Culture or 6 Energy, not 3 or 3.
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Nerfed the Progenitor Garden's helath modifier to 20% from 40%, but gave it a base 5 Diplomatic Capital on top of its 40% yield modifier for Diplomatic Capital.

I'm still a bit worried that Harmony/ Purity's health bonuses may be over-the-top, but this should at least somewhat keep it in check.
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The Gaian Well's quest now properly shows that the Xenomass tile bonus is 6 Food or 10 Diplomatic Capital, not 3 or 3.
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Purity / Supremacy
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Normalized the costs of buildings that work extra tiles. Formerly they were more expensive than their equivalents in other affinities.
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Buffed the Watchtower's quest from 2 Diplomatic Capital or 2 Science to 4 Diplomatic Capital or 2 Science.
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Buffed the Skybarge Port's quest from 3 Diplomatic Capital or 3 Energy to 6 Diplomatic Capital or 3 Energy, to make the former option more attractive in competition with Energy yield modifier bonuses boosting the latter.
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Purity
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Normalized the cost of the Mantle to cost the same as its equivalent in other affinities. Formerly it cost much more.
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Terran Landscaping now grants +1 Culture for each virtue synergy as well as the old +1 Capital bonus.
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The Eden Network now gives +2 of all yields in the Capital for each Virtue adopted, up from +1.

The Eden Network now grants 10 Culture for every trade route originating from the Capital.

MAJOR UPDATE

Finalized the Quest changes ensuring that none of them ask for affinity-affiliated buildings.