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This enables you to pick origin traits, the psi traits should show up there, when you first promote a rookie to squaddie.
Also make sure to disable the [RPGO] Commanders Choice second wave option as it's bugged with the origins one.
on the side, as the guy from comment page before, i have problem with psi abilities - psi enabling trait seems to do exactly nothing. nowhere had i ability to pick anything psi related. from what i gathered there seem to be a menu missing that should pop up when you promote a guy from a rook to a soldier.
may be also a problem with my mod salad
Knowing your mods can save yourself a headache :)