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If that doesn't work then you need to disable the mod, untick the mod in the data files section of the launcher, load your game and then save (You might want a backup in case something bad happens but nothing bad should happen). After that re-enable the mod and the mod should be reset meaning they'll be missing from your Spell list but should be on the Hall of the Elements floor again.
Hope that information helps.
Before this double check the mod is enabled by clicking Data Files on the SKyrim Launcher and making sure there is a Tick next to Size Modify Spell Tomes, if there isn't tick it and you should be able to find the spells again.
But as the only person to have the spell should be the player then it would be easier to just not use it indoors and if you do by accident use the Reset spell to put the taget back to normal size.