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I had a brief look into the files and noticed a few files are shared between both submods.
Depending on how you added the submods to the launch options, it may be incorrectly using certain data so I would suggest putting this submod ahead of the GGC in the load order.
If you are referring to the submod: 'Full Scale SSD's for TR 3.4' (ID:3386568322) then it should be fully compatible since they don't modify the same files.
Unfortunately, both submods of mine conflict with each other by editing the same file: 'GovernmentEmpire.lua'
Meaning they won't work together without a patch to merge both sets of changes into the same file.
If you would like, you can reach out on the discord and I will be willing to show you how I would go about making any submod compatible.
If so, what load order do they work in?
Yes, this submod opens the option for all factions to upgrade any acquired leaders after integration.
Yes, all units from the faction to be integrated will join the highest legitimacy faction.
No research is required for the integration step.
If you happen to integrate either Galactic Empire or the formed Dark Empire, you can progress regimes via the usual events similar to Galactic Empire, including research or losing the regime leader.