This should be fixed in the open beta 1.12.4:

"- Refresh airwing stats when setting a scrambling mission (this should fix the 'carrier bug')"

Additionally, per the Open Beta thread on the forums, putting any kind of fighter weapon on Carrier NVs or Cas still means they don't attack in battles. PDX confirms this is only temporary, as it will move to being subarchetype based in the future

Updated

@Abee - Understood. I'll update it for anti-ship missiles shortly.

still don't work for anti-ship missile but it work perfectly for torpedo

thank you amazing mod