Ok so there are 2 issues with the current posted version.
1. New Synthetic pops do not get the correct traits and are a new species
2. Happiness is wrong for pops built due to there habitibility is set to 0.10 instead of 1.0 on core worlds.

There are a few guides on how to edit a zip file to correct this but I for one am not good at those things. Has anyone posted a corrected version? If so please post a link here for those of us who love the mod.