This is an example of a working Linux startup script with both of my mods active.

#!/bin/bash
var=$(pwd)
cd $var/ShooterGame/Binaries/Linux
./ShooterGameServer /Game/Mods/497086514/EradicatorMod?listen?ModId=497086514,/Game/Mods/499751025/EV2Mod?listen?GameModIds=499751025?TheIsland?MaxPlayers=127?ServerAdminPassword=#####?Port=#####?QueryPort=#####?RCONEnabled=true?RCONPort=#####?SessionName="#####" -listen -server -log & exit