The creators have accidentally corrupted the Atris Academy Module and are working on a fix right now

An update was just released, so hopefully this issue has been fixed

Yes the update fixed my issue :
http://gtm.steamproxy.vip/workshop/filedetails/discussion/485537937/412446890555153762/
Thanks.

A small problem is not resolved though... I'm not sure if it's intended or not, but I cannot train the handmaiden once she becomes a jedi.

That's not a bug.

Got a new issue.

Games run fine. I finish M4-78 as well, go to Dantooine, then back to Telos...
And then when I walk through the coucil chamber, I see Kreia standing on the ramp, Atris further in her room.
The cutsene I saw before with the two of them repeat...then Kreia disapear, there are two handmaiden that pops up where she was with the same dialogues than when I first visited...

And Atris is gone, and I can walk to her room where nothing happen and I am locked inside.

My guess is it's not supposed to happen this way...

I seem to have fixed it.
I reinstalled the mod, no effet...
I did it again, and relaoded before the Dantooine showdown at the Enclave...and now, I got an extra scene where Kreia interacted with the two handmaiden after Atris.

Then I went to Atris who was there (passing Kreia who disappeared like a ghost on the ramp).
I could talk to Atris and fight her.
Now I am on Telos with HK. So things seems to be normal. Though the Questlog is full with a dozen blanked quest in the active part.

Im still getting this issue, I just did Korriban but when i try to go anywhere else it takes me to an empty telos academy.

It's been fixed a long time ago... restart Steam to force the DL?