Because the instructions in this guide require the Developer Console, it is necessary that you be playing on the PC version of the game.

Here are lists of console commands that might (or will) be used.

Console commands that will be used necessarily:

completequest [QUST] - Sets a quest to complete

resetquest [QUST] - Unsets all quest stages

setrestrained [T/F] - Sets if target is restrained or not

setstage [QUST] [STAGE] - Activates a stage to be completed

Console commands that might be helpful:

addkeyword [KWRD] - Adds a keword to the selected reference

addperk [PERK] - Adds a perk to the selected reference

additem [BaseID] - Adds an item to the selected reference's inventory

bat [FILENAME] - Runs a list of commands from a .txt file in the fallout 4 directory

coc [CELL] - Teleports player to a specific cell

enable - Enables target

moveto [REFERENCE] - Moves target to specified reference (moveto player)

prid [REFERENCE] - Makes reference the current target

set [VARIABLE] to [Value] - Sets global variables

setally [FACT1] [FACT2] [True/False] [0?] - Sets factions to ally with another

setpv [VARIABLE] [Value] - Sets private variables on target

resurrect - Brings target back to life

tdetect - Prevents AI detection

tcl - Disables collisions (flying through walls, freezes actors in place)

Console commands you can use for personal investigation

help [STRING] 3 - Lists Global Variables that contain specified string

help ["Location"] 4 CELL - Lists exterior and interior cells related to or containing specfied string

inv - Lists the inventory of the target

sqt - Lists all active quest targets

sqo [QUST] - Lists all quest's objectives

sqs [QUST] - Gives quest's code name and reference, lists all stages that can be edited, and if the quest is STOPPED or not.

tmm 1 - Reveals all non-quest-locked fast travel locations

Copy the sequence of commands and place them in a txt document in your fallout 4 directory, preferably with the name following the "Bat", as the 'Bat' command is what runs these command lists.

'Bat DanseRomance'

To make Danse able to be Romanced before Blind Betrayal is completed.

set Danse_AffinityCondition_PlayerCompletedQuest to 1

'Bat UnlockSettler'

To make any settler movable, commandable, and able to become provisioners (useful for fixing Sturges, Mama Murphy and Smiling Larry, as well as the companion dismissal glitch). The changes will be immediate, this is an improvement to the previous bat I had in this guide.

(click on the settler)
setpv bAllowCaravan 1
setpv bAllowMove 1
setpv bCommandable 1
addkeyword workshopallowcommand
addkeyword workshopallowmove
addkeyword workshopallowcaravan

'Bat CompanionAffinity_1'

Turns all "Companion Hated That" and "Companion Disliked That" into neutral results, so you can still have X6-88 with you and do railroad quests (however if X6-88 ever sets foot in the RR HQ they will become hostile), or have Deacon with you and do institute quests etc.

set CA_Event_Hates to 0
set CA_Event_Dislikes to 0

'Bat CompanionAffinity_0'

Returns companion affinity to normal values.

set CA_Event_Hates to -35
set CA_Event_Dislikes to -15

This is a glossary of all missions so you know the order of them, which faction they belong to, if they result in war with another faction, and if I categorise them as main or side. I do not agree with the wiki as to which quests are main and which are side; main quests to me are quests that are actually required to be completed to reach the specific faction's ending, side quests are non-repeatable quests that are not main quests.

This list might not be complete, so please add any information you can in the comments.

• '|' means OR
  
• Items within the first {} mean that they normally must be completed in order for it to start.
  
• Items within the second {} Mean they normally must be completed in order for it to complete.
  
• Items within the third {} mean they normally must remain uncompleted in order for it to start
  
• Items within the fourth {} mean they normally must remain uncompleted in order for it to complete
  
• Levels with a '[]' instead of a number means they are started simultaneously to the above level.
  
• Levels with a '()' instead of a number means they are not part of a sequence.
  
• Levels with a '{}' instead of a number means they are a component of the above level.

Minutemen:

Main:

• 1. When Freedom Calls {Out of Time}
  
• 2. The First Step {When Freedom Calls}
  
• 3. Taking Independence {The First Step}
  
• 4. Old Guns {Taking Independence}
  
• 5. Inside Job {The Glowing Sea}
  
• 6. Banished From The Institute {The Molecular Level} - Enemies With Institute
  
• 7. Form Ranks {Inside Job, Banished From The Institute}
  
• [] With Our Powers Combined {Old Guns}
  
• 8. Defend The Castle {Form Ranks | With Our Powers Combined}
  
• 9. The Nuclear Option (Minutemen) {Defend The Castle, Form Ranks}

Side:

• () Sanctuary {When Freedom Calls}
  
• () Out of Fire
  
• () Returning The Favor
  
• () Troubled Waters

Repeatable:

• () Kidnapping
  
• () Greenskins
  
• () Ghoul Problem
  
• () Taking Point
  
• () Raider Troubles
  
• () Clearing The Way
  
• () Rogue Courser {The First Step, The Nuclear Option (Any)}

Unknown

• () Abernathy Farm: Retribution {?}

Brotherhood of Steel:

Main:

• () Reveille {Reunions} {} {Fire Support}
  
• 1. Fire Support
  
• 2. Call to Arms {Fire Support}
  
• 3. Shadow of Steel {Reunions | Reveille} {Call To Arms}
  
• 4. Tour of Duty {Shadow of Steel}
  
• 5. No Mercy {Tour of Duty}
  
• 6. Outside The Wire {No Mercy, The Molecular Level}
  
• [] From Within
  
• 7. Liberty Reprimed {Outside The Wire, From Within}
  
• 8. Blind Betrayal {Liberty Reprimed}
  
• 9. Tactical Thinking {Blind Betrayal} - Enemies with Railroad
  
• 10. Spoils of War {Tactical Thinking} - Enemies with Institute
  
• 11. Ad Victoriam {Spoils of War}
  
• 12. The Nuclear Option (Brotherhood) {Ad Victoriam}
  
• 13. A New Dawn {The Nuclear Option (Brotherhood)}

Side:

• () A Loose End {From Within}
  
• 1. Semper Invicta {Call to Arms}
  
• {} Cleansing The Commonwealth
  
• {} Quartermastery
  
• 2. The Lost Patrol {Semper Invicta}
  
• 3. Duty or Dishonour {The Lost Patrol}

Repeatable:

• () Cleansing The Commonwealth {Semper Invicta}
  
• () Quartermastery {Semper Invicta}
  
• () Learning Curve {Tour of Duty}
  
• () Feeding The Troops {Tour of Duty}
  
• () Leading By Example {Duty or Dishonour}
  
• () Reactor Coolant {A New Dawn | The Nuclear Option (Minutemen)}

Railroad:

Main:

• 1. Road to Freedom
  
• 2. Tradecraft {Road to Freedom} {} {Mass Fusion} {Mass Fusion}
  
• 3. Underground Undercover {Tradecraft, The Molecular Level} {} {Mass Fusion}
  
• 4. Precepice of War {Underground Undercover} {} {} {With Our Powers Combined}
  
• 5. Rockets' Red Glare {Underground Undercover} {} {} {With Our Powers Combined}
  
• 6. The Nulcear Option (Railroad) {Rockets' Red Glare | With Our Powers Combined}

Side:

• 1. Boston After Dark {Tradecraft}
  
• 2. Butchers Bill {Boston After Dark}
  
• [] Operation Ticondaroga {The Molecular Level, Boston After Dark}
  
• 3. Butchers Bill 2 {Butchers Bill}
  
• [] Mercer Safehouse
  
• 4. Memory Interrupted {Butchers Bill 2}
  
• () To The Mattresses (1:6) {To The Mattresses (n-1), The Nuclear Option (Railroad) | The Nuclear Option (Minutemen)}
  
• () Concierge {Mercer Safehouse}
  
• () Randolph Safehouse {Mercer Safehouse}
  
• () Randolph Safehouse (2:6) {Randolph Safehouse (n-1)}
  
• () Jackpot (1:3) {Jackpot (n-1), Mercer Safehouse}

Repeatable:

• () Weathervane {Tradecraft, Institutionalized}
  
• () Variable Removal {Tradecraft, The Molecular Level}
  
• () Lost Soul {Tradecraft, The Molecular Level}
  
• () Concierge {Mercer Safehouse}
  
• () High Ground {The Nuclear Option (Railroad)}
  
• () A Clean Equation {The Nuclear Option (Railroad)}

Unknown

Institute:

Main:

• 1. Institutionalized {The Molecular Level}
  
• 2. Synth Retention {Institutionalized}
  
• 3. The Battle of Bunker Hill {Synth Retention}
  
• 4. Mankind-Redefined {The Battle of Bunker Hill}
  
• 5. Mass Fusion {Mankind-Redefined} - Enemies with Brotherhood
  
• 6. Pinned {Mass Fusion}
  
• 7. Powering Up {Pinned}
  
• 8. End of The Line {Powering Up} {} {} {Tactical Thinking} - Enemies with Railroad
  
• 9. Airship Down {End of The Line} {} {} {Rockets' Red Glare | With Our Powers Combined}
  
• 10. Nuclear Family {Powering Up, Airship Down | Rockets' Red Glare | With Our Powers Combined, End of The Line | Tactical Thinking}

Side:

• () A House Divided {Mankind-Redefined}
  
• () Building a Better Crop {Institutionalized}
  
• () Plugging a Leak {Nuclear Family} {} {Tradecraft}

Repeatable:

• () Appropriation {Institutionalized}
  
• () Hypothesis {Institutionalized}
  
• () Reclamation {Institutionalized}
  
• () Pest Control {Institutionalized}
  
• () Political Leanings {Institutionalized} {} {In Sheep's Clothing}

Unknown

• () The Replacement {?}
  
• () Looking to the Future {?}

https://youtu.be/10EkbFB7DQE

Make sure that both Spoils of War and Mass Fusion are unlocked by going through both faction's quests before using commands in the third sequence. Otherwise you'll have started brotherhood quests way before you need to which will cause issues with Proctor Ingram.

Sometimes when manipulating these quests they will break and become static, so just keep reloading a previous save and trying again until by the end of '2' Blind Betrayal is completed and you have two quest objectives in Tactical Thinking. Otherwise Danse will break and you won't be able to do Railroad quests.

As soon as you unlock Underground Undercover STOP and do not advance it.

During The Molecular Level, it does not matter who you choose. If you do it with sturges he will no longer be commandable in your settlement. I have only ever done it with Proctor Ingram or Sturges, so I'm not sure what happens if you do it with Tinker Tom. If you choose to build it with sturges, you can unlock his commands by running "UnlockSettler" in the Suggestions section.

1. From Within

- 1. After speaking with Elder Maxson about Madison Li; {
setstage BoS203 70
}

2. Liberty Reprimed, Blind Betrayal, Tactical Thinking:

- 2. After entering Sentinel Site; {
setstage BoS301 180
setstage BoS301 210
setstage BoS302 185
setstage BoS302 255
set Danse_AffinityCondition_PlayerCompletedQuest to 1
setstage BoS302B 140
}

NOTE: The brotherhood will not have PAM, I consider it better that the railroad has her so you can do all of the railroad quests.

Complete Liberty Reprimed (talk to Ingram) THEN complete Tactical Thinking (talk to Kells)

3. Mass Fusion, Spoils of War, Ad Victoriam:

- 3. As soon as you have both Spoils of War and Mass Fusion active; {
setstage InstMassFusion 300
resetquest InstMassFusion
setstage BoS303 40
setstage BoS303 255
resetquest bos304
completequest bos304
setstage BoS305 20
}

4. Underground Undercover, Precipice of War, Rockets' Red Glare:

- 4. As soon as you unlock Underground Undercover and have talked to Tinker Tom; {
setstage RR201 1100
setstage RR302 11100
setstage RR303 11100
setstage RR303 1300
completequest MQ302RR
setstage RRR08 50
}

5. End of the Line:

- 5. After talking to Father; {
setstage Inst306 200
}

6. Airship Down:

- 6. After talking to father; {
resetquest Inst307
completequest Inst307
setstage Inst308 10
setstage Inst308 50
5c337.setrestrained 0
setstage A8257 20
}

Project Valkyrie is a mod with the overview
"Twenty quests, with a story that lets you finish the vanilla game in new ways. Want to imprison Preston and execute Desdemona while brokering peace between the Institute and the Brotherhood? Kill everyone? Let the four major factions co-exist in harmony? Or something in between? Now you can."

It features an all factions ending with properly voiced process, which is pretty amazing.
It might not integrate well with a mostly vanilla mod setting.

https://www.nexusmods.com/fallout4/mods/28085

This mod that lets you save father and he becomes your companion works well with project valkyrie:
https://www.nexusmods.com/fallout4/mods/35198

NOTE: Project Valkyrie and Outcasts And Remnants (the parent mod you need to install as well)
contain sexual content and references to pimp culture and features some areas that I don't think mesh well with the fallout universe. Your discretion is advised.

The clothing added by the mod only works with CBBE and so if you don't want to see glitchy texture maps you're going to need to install that too.

If I had the choice I would remove everything but Lyons, Valk, and Finley and start over with fresh areas and a different design motivation.

If you want to keep danse, you'll have to complete Blind Betrayal normally, and spare Danse. Then he won't mind if you destroy the brotherhood.

You can use this mod to recruit danse into the railroad or institute:
http://www.nexusmods.com/fallout4/mods/21923/?

1. Underground Undercover, Precipice of War, Rockets' Red Glare:

- 1. As soon as you unlock Underground Undercover and have talked to Tinker Tom; {
setstage RR201 1100
setstage RR302 11100
setstage RR303 11100
setstage RR303 1300
completequest MQ302RR
setstage RRR08 50
}

2. End of The Line:

- 2. After speaking to Father; {
setstage Inst306 200
setstage inst308 10
setstage Inst308 50
5c337.setrestrained 0
setstage A8257 20
}

Now you do Airship Down, and this is where you get the choice to finally destroy the brotherhood.
We skip Underground Undercover so Glory never dies.

http://www.nexusmods.com/fallout4/mods/19835/?

A mod that allows you to decide who to kill the brotherhood with (including minutemen), and whether you wish to destroy the railroad.

With this mod you can keep the railroad happy alongside the institute. Though I don't know whether quests like High Ground, A Clean Equation and To The Mattresses start.

Make sure that both Spoils of War and Mass Fusion are unlocked by going through both faction's quests before using commands in the third sequence. Otherwise you'll have started brotherhood quests way before you need to which will cause issues with Proctor Ingram.

1. From Within

- 1. After speaking with Elder Maxson about Madison Li; {
setstage BoS203 70
}

2. Liberty Reprimed, Blind Betrayal:

- 2. After entering Sentinel Site; {
setstage BoS301 180
setstage BoS301 210
setstage BoS302 185
setstage BoS302 255
set Danse_AffinityCondition_PlayerCompletedQuest to 1
}

Complete Liberty Reprimed.

3. Mass Fusion, Spoils of War:

- 3. As soon as you have both Spoils of War and Mass Fusion active; {
setstage InstMassFusion 300
resetquest InstMassFusion
setstage BoS303 40
setstage BoS303 255
resetquest bos304
completequest bos304
setstage BoS305 20
}

4. Airship Down:

- 4. After talking to father; {
resetquest Inst307
completequest Inst307
setstage Inst308 10
setstage Inst308 50
5c337.setrestrained 0
setstage A8257 20
}

http://www.nexusmods.com/fallout4/mods/21923/?

This mod allows you to spare the railroad and danse by usurping Maxson as Elder of the Brotherhood.

Apparently the quest Reactor Coolant does not initiate.

Here's another person's guide on how to do this ending:
http://gtm.steamproxy.vip/sharedfiles/filedetails/?id=597330317
This is a legitimate method and solution, it requires no console commands.
I would still recommend running this command so you can romance danse:
set Danse_AffinityCondition_PlayerCompletedQuest to 1

Here is a video made by The Triple S League.
http://www.nexusmods.com/fallout4/mods/3511/

Do not talk to to PAM, according to them she will try to start a war with the brotherhood.






This video from BreakfastLunchGaming is very comprehensive
Check his comments section and description for extra information

"Diary of a Madman" is a mod that gives you integrated quests to destroy all the major and some minor factions in the game.

https://www.nexusmods.com/fallout4/mods/45546

(this mod pairs well with "Depravity" https://www.nexusmods.com/fallout4/mods/35513 and "Sim Settlements - Conqueror" https://www.nexusmods.com/fallout4/mods/37000 )

http://www.eurogamer.net/articles/2016-05-23-fallout-4-far-harbor-guide-4049?page=9

The Far Harbor DLC has a legitimate neutral ending, thankfully.
DiMA offers a solution that keeps all factions friendly and yeilds the most quest rewards (except for Lucky Eddy)

Unfortunately you can't recieve all of the perks since some require you to destroy a faction to receive them. So here they are: (xx is the DLC load order, mine is 03)
Crusader of Atom: player.addperk xx023b36
Inquisitor of Atom: player.addperk xx02c9b2
Destroyer of Acadia: player.addperk xx02c9b4
Far Harbor Survivalist: player.addperk xx02c9b5

Lucky Eddy: player.additem xx045675

I would recommend looking at the modded method first, it gives a much cleaner result and has far fewer bugs.

This is a solution for the Nuka World DLC that prevents preston from hating you and allows you to be the overboss with all 3 raider factions loyal to you while also returning power to nuka world.

If you dont want to take over any settlements in the commonwealth this mod might be useful:
http://www.nexusmods.com/fallout4/mods/18121/?
However, it is very likely to be incompatible with this method as I have not tested it, so I do not recommend you use it if you plan on using this method.

Every time you claim an outpost, preston will hate you (permanently), to prevent this:
Before claiming (before placing flag); {
1a4d7.removefromfaction a1b85
}
After claiming (after placing the flag); {
1a4d7.addtofaction a1b85 1
}
(Method thanks to Gropanga)
This is necessary even if you haven't met preston yet.
I am unsure of how he reacts to forcing settlements to become vassels.

I strongly recommend not taking any settlements until after this process is over.

0. The Grand Tour: OPTIONAL

NOTE: You should start all of the quests from the parks before doing this

- 0. If you want to skip clearing out the park areas until later; {
setstage DLC04MQ03 600
}

NOTE: Don't progress Home Sweet Home yet

1. Open Season, Power Play, Cleaning House:

- 1. After starting Home Sweet Home; {
setstage DLC04RaiderKickout 100
setstage DLC04MQ05 120
}

- 2. After speaking to Gage; {
setstage DLC04MQ05Cleanup 500
}

3. Home Sweet Home

- 3. After defeating the Sinners and obtaining the Grenades Shank suggests you get.
OR: You don't plan on taking any settlements (ever, this will break shank otherwise); {
CompleteQuest DLC04MQ04
}

Unfortunately blocking Power Play does not allow you to recieve any of the perks from the factions, so here they are: (xx is the DLC load order, for me it's 06)
Chosen Disciple: player.addperk xx009c89
Pack Alpha: player.addperk xx009c8a
Ace Operator: player.addperk xx009c8b

Also here are the Wasteland Warlord perks in case you can't get them:
Wasteland Warlord 1: player.addperk xx0277d0
Wasteland Warlord 2: player.addperk xx0277d1
Wasteland Warlord 3: player.addperk xx0277d2

Here is a mod that allows you to have all the gangs alive, this does not have the same bugs as in my console command method. This is a well made mod that I think makes my method for nuka world very obsolete. However there are some glaring issues with text formatting and grammar/spelling.

FO 4-ANWGA (All Nuka World Gangs Alive) by Mario Lara
https://www.nexusmods.com/fallout4/mods/27028/?
NOTE: Mario Lara seems to not want to support bethesda games anymore and has pulled their mods. EDIT: Mario Lara has unhidden their mods so the following isn't relevant (but the suggestion is still open if they hide the mod in the future) EDIT 2: It seems like the mod has been hidden again.
I have reuploaded my copy of their mod to mediafire however steam doesn't like mediafire links,
Contact me on my discord Magic_Gonads#7347
(Do not add me as friend, I accept messages from anyone, so just send me a message, if you add me and I don't recognise you from a shared discord server I will decline)

I recommend using this mod as well so you can do it entirely within nuka world instead of having to overstep any default minutemen settlements:
https://www.nexusmods.com/fallout4/mods/23895/?

I recently figured out how to finish the Secret of Cabot House quest with both Lorenzo and the Cabots alive. Using console commands of course!

The commands start after you free Lorenzo:

setstage ms09 1340

Go to Cabot House (or do player.moveto 47ec3)
Tell jack that Lorenzo is dead (should be one of the 4 options), while he's talking to the others:

setstage ms09 1800
setstage ms09 1810
setstage ms09 1820

Talk to jack again and finish the quest (say something nice to him), then:

setstage ms09 1850

Now speak to Lorenzo (to check if he can be spoken to). Wait 1 week ingame and Jack will give you the Lorenzo's Artifact Gun

Related Mods:
https://www.nexusmods.com/fallout4/mods/28085
https://www.nexusmods.com/fallout4/mods/35198

My Saves:
http://www.nexusmods.com/fallout4/mods/6895/

Saves by Users:

All Factions:
http://www.nexusmods.com/fallout4/mods/6852/
https://www.nexusmods.com/fallout4/mods/20979/?

Without Brotherhood:

Without Railroad:

Nuka World All Factions:

Please report any bugs or issues you encounter, I will try to help, and if it's an issue I can't solve immediately I will look into it and change the guide.

All Factions:

Liberty Prime will never activate or be activatable, this bug cannot be fixed without causing other issues. Rest in Peace Liberty...

Without Brotherhood:

No bugs.

Without Railroad:

Same issue with Liberty Prime, RIP.

Nuka World All Factions:

Power Play shows up incorrectly in quest log due to progression in Home Sweet Home.