These are achievements you will naturally get through playing the game. Other than the endings, you won't miss them.
Clear Chapter 1. Unmissable.
Clear Chapter 2. Unmissable.
Clear Chapter 3. Unmissable.
Clear Chapter 4. Unmissable.
Clear Chapter 5. Unmissable.
Clear Chapter 6. Unmissable.
Clear Chapter 7. Unmissable.
Clear Chapter 8. Unmissable.
Clear Chapter 9. Unmissable.
Clear Chapter 10. Unmissable.

Trounce your first real victim.
Basically just kill an enemy.

Win a battle after using a four-person attack.
You have to do do chain attacks that show up with your combo finisher or after using a tactical skill.
Keep doing chain attacks and eventually you will get the 4 people chain attack.
You can cheese this with Any of the cancel discs and just skip straight to the finisher then do the chain attack, switch back and do the finisher again to just spam chain attacks.

Achieve Link Drive Lv. 4.
Keep building the Link Drive meter by attacking enemies and don't use EX Drive until it's full.

Score a 100 hit combo.
Pretty straightforward, you probably will get this naturally.
Otherwise go to the arena and find a challenge that makes you do 1 damage due to not doing the challenge (such as rush attacks only) and keep comboing until you get 100 hits combo.

Deal over 10,000 total damage.
Almost impossible to miss, you will get this very easily.

Perform 100 total chain attacks.
You do chain attacks by doing a combo finisher or using a tactical skill, then switching to another character. Keep doing it until you get the achievement.

Defeat 500 enemies.
You will most likely get this naturally.

Use 100 items during battle.
You can use an item in battles by opening up the menu then selecting the item. Keep using them until you get the achievement.

Buff an ally 100 times.
You have to use tactical skills that buff your teammates through the start menu and select an ally, the quick option without the menu most likely just buff yourself and won't count towards the achievement I think.
I got the achievement through using Blanc's buff skill to an ally.

Win 250 battles.
You will most likely get this naturally overtime.

Press a switch.
You won't be able to progress without pressing switches so you can't avoid this.

Run a total of 100 km.
You have to run 100 km, but there's no play data that tracks this so you just have to keep going until you get this.
I got the achievement while trekking through the Neptral towers as my last achievements so probably not until endgame when you get this.

Jump 100 times.
Jump like a kangaroo.

Open 100 treasure chests.
You will find the treasure chests in dungeons as those light cubes and they will show up as treasure chests on the minimap.

Successfully Surprise Attack 50 enemies.
In the overworld while in a dungeon, hit an enemy so you get the initiative attack.

Drive your motorcycle 300 km.
You won't get this achievement naturally, but you can check your progress through playdata luckily.
I basically just picked the desert then biked in circles with a rubberband holding down the accelerate button and the left analog stick, it took around 2 hours before I got 300,000 meters.

Accept and complete 10 requests.
You will find NPCs in dungeons that have requests for you. It's usually kill a certain type of monster or maybe find someone in the dungeon. Complete them and then you have to go back to report in the request. There's no menu for this, it will just show on the UI and only shows 2 requests at once.

Destroy 50 destructible objects within dungeons.
You will find crates in later dungeons that you can destroy. Just leave the dungeon and come back to respawn the objects.

Get a dungeon's Area Exploration Rate to 100%.
You have to remove fog of war from the map by exploring it, so just walk to the edges of the map to clear it.

Clear all the challenge missions in the Arena.
After you unlock the arena, there will be challenges where you have to follow the condition to finish the challenge, otherwise you will just deal 1 damage to the enemies.
For example you can only use rush attacks, so switch your skills to rush combo skills, otherwise you will take 10 years to kill one enemy.

Get A Rating or higher in the Arena's Boss Rush mode.
You will unlock boss rush after finishing the story.
There are 17 fights you have to go through without dying and you have a time limit to be able to get the rank you need.
The rough fights are the ones with 2 bosses or K-Sha who can easily combo you to death.


Achieve SS Rank in the Arena.
You have to do rank battles, and each rank has 4 battles and then a promotion match.
You will start at F rank and work your way up to SS rank.

Raised the level of all characters to 99.
You have to level up everyone to level 99, so the best way to level up will be in Neptral Towers where you will face high level monsters and in groups so it's the best EXP.
You should also develop discs that that EXP gain up and also No Damage Bonus to get the most out of the fights.

Reach the Unknown Area in Neptral Tower.
Reach the Unknown Area in True Neptral Tower.
Reach the Unknown Area in Ultimate Neptral Tower.
After you beat the boss at floor 100 in Neptral Tower, you will get to Unknown Area, which is just 101 into infinity. You will still get checkpoints every 10 floors but the game won't keep track for you.

Create 30 Discs.
Creating discs is how you get Disc Effects and they are pretty important for combat.
You will get Creators who will have Disc Effects attached to them, but they're not guaranteed.

Obtain 50,000 CP worth of Sales.
You can get CP through developing discs, you will most likely get this as you're looking for certain disc effects.

Exchange business cards with over 10 Creators.
You will exchange business cards through the email in the game.

Gain the ability to develop Discs of every genre.
You will have to upgrade the buildings for the genre and you need materials for it.
To get the materials for the upgrades you have to send Creators out on dispatches and they will return when you enter and leave a dungeon.

Create a Disc with a ★4 rating or higher.
When creating discs, you select creators and the genre.
The best way to get a high rating disc is to level up the creators first.
The fastest way to level up creators is to send them out on expeditions.
Once you send them out, go into a dungeon and leave and then back into town, then they will give you loot and you rinse and repeat to leave to level them up.

Get a rating of A or higher on your Earnings Report.
Your rating depends on building level, amount of discs made, income with CP, enemies defeated, expanded sales areas, and world share %.

Get your building level to MAX.
You get Building Renovation Kits through dispatching creators to expeditions. Once you progress through the story enough, just upgrade the buildings.

Get Big Neptune, The Failure Goddesses, The Four Goddesses, and the Goddess Candidates in the party.
Story related, you will unlock this naturally.

Purchase over 100 weapons and items in the Shop.

Expand your Sales Area over the entirety of Gamindustri.
Unlock every area after beating the game. You get the permits through Creator expeditions so send them out.

Take 10 photos in Photo Mode.
Just take 10 photos in Photo Mode. The Photo Mode is in the title screen.

Fill 50% of the Enemy Encyclopedia.
This will only unlock once you open Enemy Encyclopedia and you have 50% enemies.

Obtain over a total of 50,000 held CP.
This is very easy to get as you will create discs anyway.